zebrafish ucl PUBLICATIONS

Here you can find a comprehensive list of publications produced by Zebrafish UCL. 

You can also download summaries of our publications that need less scientific background to understand than the original papers. The UCL Fish Facility was established in 1998 and if you would like to see the citation metrics for nearly all of the zebrafish papers from UCL researchers since then, you will find them here.

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2024

Asaph Zylbertal, Isaac H. Bianco
Mirror-assisted light-sheet microscopy: a simple upgrade to enable bi-directional sample excitation.
Neurophotonics, Vol. 11, Issue 3, 035006 (August 2024). https://doi.org/10.1117/1.NPh.11.3.035006

Powell GT, Faro A, Zhao Y, Stickney H, Novellasdemunt L, Henriques P, Gestri G, Redhouse White E, Ren J, Lu W, Young RM, Hawkins TA, Cavodeassi F, Schwarz Q, Dreosti E, Raible DW, Li VSW, Wright GJ, Jones EY, Wilson SW.
Cachd1 interacts with Wnt receptors and regulates neuronal asymmetry in the zebrafish brain.
Science 384, 573-579 (2024). DOI:10.1126/science.ade6970

Suppermpool, A., Lyons, D.G., Broom, E, and Rihel J.
Sleep pressure modulates single-neuron synapse number in zebrafish.
Nature (2024). https://doi.org/10.1038/s41586-024-07367-3

Kroll F, Donnelly J,  Özcan GG, Mackay E,  Rihel J
Behavioural pharmacology predicts disrupted signalling pathways and candidate therapeutics from zebrafish mutants of Alzheimer’s disease risk genes
eLife13:RP96839 2024
https://doi.org/10.7554/eLife.96839.1

Özcan GG, Lim S, Canning T, Tirathdas L, Donnelly J, Kundu T, Rihel J.
Genetic and chemical disruption of amyloid precursor protein processing impairs zebrafish sleep maintenance.
iScience. 2024 Jan 11;27(2):108870. doi: 10.1016/j.isci.2024.108870.

2023

Alba-González, A.; Dragomir, E.I.; Haghdousti, G.; Yáñez, J.; Dadswell, C.; González-Méndez, R.; Wilson, S.W.; Tuschl, K.; Folgueira, M.
Manganese Overexposure Alters Neurogranin Expression and Causes Behavioral Deficits in Larval Zebrafish.
Int. J. Mol. Sci. 2024, 25, 4933. https://doi.org/10.3390/ijms25094933

Gurung S, Karamched S, Perocheau D, Seunarine KK, Baldwin T, Alrashidi H, Touramanidou L, Duff C, Elkhateeb N, Stepien KM, Sharma R, Morris A, Hartley T, Crowther L, Grunewald S, Cleary M, Mundy H, Chakrapani A, Batzios S, Davison J, Footitt E, Tuschl K, Lachmann R, Murphy E, Santra S, Uudelepp ML, Yeo M, Finn PF, Cavedon A, Siddiqui S, Rice L, Martini PGV, Frassetto A, Heales S, Mills PB, Gissen P, Clayden JD, Clark CA, Eaton S, Kalber TL, Baruteau J.
The incidence of movement disorder increases with age and contrasts with subtle and limited neuroimaging abnormalities in argininosuccinic aciduria.
J Inherit Metab Dis. 2023. doi: 10.1002/jimd.12691.

Barlow IL, Mackay E, Wheater E, Goel A, Lim S, Zimmerman S, Woods I, Prober DA, Rihel J.
The zebrafish mutant dreammist implicates sodium homeostasis in sleep regulation.
Elife. 2023 Aug 7;12:RP87521. doi: 10.7554/eLife.87521. 

Benoit E, Lyons DG, and Rihel J (2023). 
Noradrenergic Tone is Not Required for Neuronal Activity-Induced Rebound Sleep in Zebrafish.
J Comp Physiol B. 2023 Jul 22. doi: 10.1007/s00360-023-01504-6. 

Ali, M.A., Lischka, K., Preuss, S.J., Trivedi, C.A., Bollmann, J.H. (2023)
A synaptic corollary discharge signal suppresses midbrain visual processing during saccade-like locomotion.
Nature communications. 14:75927592.

Tornini VA, Miao L, Lee HJ, Gerson T, Dube SE, Schmidt V, Kroll F, Tang Y, Du K, Kuchroo M, Vejnar CE, Bazzini AA, Krishnaswamy S, Rihel J, Giraldez AJ.
linc-mipep and linc-wrb encode micropeptides that regulate chromatin accessibility in vertebrate-specific neural cells.
Elife. 2023 May 16;12:e82249. doi: 10.7554/eLife.82249.

Chong-Morrison V, Mayes S, Simões FC, Senanayake U, Carroll DS, Riley PR, Wilson SW, Sauka-Spengler T.
Ac/Ds transposition for CRISPR/dCas9-SID4x epigenome modulation in zebrafish.
Biol Open. 12(6):bio059995. doi: 10.1242/bio.059995.

Zylbertal A & Bianco IH (2023)
Recurrent network interactions explain tectal response variability and experience-dependent behavior
eLife 12:e78381.  https://doi.org/10.7554/eLife.78381

Weinschutz Mendes H, Neelakantan U, Liu Y, Fitzpatrick SE, Chen T, Wu W, Pruitt A, Jin DS, Jamadagni P, Carlson M, Lacadie CM, Enriquez KD, Li N, Zhao D, Ijaz S, Sakai C, Szi C, Rooney B, Ghosh M, Nwabudike I, Gorodezky A, Chowdhury S, Zaheer M, McLaughlin S, Fernandez JM, Wu J, Eilbott JA, Vander Wyk B, Rihel J, Papademetris X, Wang Z, Hoffman EJ.
High-throughput functional analysis of autism genes in zebrafish identifies convergence in dopaminergic and neuroimmune pathways.
Cell Rep. 2023 Mar 28;42(3):112243. doi: 10.1016/j.celrep.2023.112243. Epub 2023 Mar 17.

2022

María Hernández-Bejarano, Gaia Gestri, Clinton Monfries, Lisa Tucker, Elena I. Dragomir, Isaac H. Bianco, Paola Bovolenta, Stephen W. Wilson, Florencia Cavodeassi (2022)
Foxd1-dependent induction of a temporal retinal character is required for visual function.
Development 149 (24) doi: https://doi.org/10.1242/dev.200938

Tuschl K, White RJ, Trivedi C, Valdivia LE, Niklaus S, Bianco IH, Dadswell C, González-Méndez R, Sealy IM, Neuhauss SCF, Houart C, Rihel J, Wilson SW, Busch-Nentwich EM.
Loss of slc39a14 causes simultaneous manganese hypersensitivity and deficiency in zebrafish.
Dis Model Mech. 2022. doi: 10.1242/dmm.044594.

Jason J Otterstrom, Alexandra Lubin, Elspeth M Payne, Yael Paran (2022)
Technologies bringing young Zebrafish from a niche field to the limelight.
SLAS Technol. 2022 Apr;27(2):109-120. doi: 10.1016/j.slast.2021.12.005

Turner KJ, Hawkins TA, Henriques PM, Valdivia LE, Bianco IH, Wilson SW and Folgueira M (2022)
A Structural Atlas of the Developing Zebrafish Telencephalon Based on Spatially-Restricted Transgene Expression.
Front. Neuroanat. 16:840924. doi: 10.3389/fnana.2022.840924

2021

Kroll F, Powell GT, Ghosh M, Antinucci P, Hearn TJ, Tunbak H, Lim S, Dennis HW, Fernandez JM, Hoffman EJ, Whitmore D, Dreosti E, Wilson SW and Rihel J (2021).
A simple and effective F0 knockout method for rapid screening of behaviour and other complex phenotypes.
eLife 2021;10:e59683. DOI:10.7554/eLife.59683

Oscar A. Peña, Alexandra Lubin, Jasmine Rowell, Yvette Hoade, Noreen Khokhar, Hanna Lemmik, Christopher Mahony, Phoebe Dace, Chianna Umamahesan and Elspeth M. Payne (2021).
Differential Requirement of Gata2a and Gata2b for Primitive and Definitive Myeloid Development in Zebrafish
Front. Cell Dev. Biol., 13 September 2021; doi.: 10.3389/fcell.2021.708113

Alexandra Lubin , Jason Otterstrom, Yvette Hoade, Ivana Bjedov , Eleanor Stead, Matthew Whelan , Gaia Gestri, Yael Paran, Elspeth Payne(2021).
A versatile, automated and high-throughput drug screening platform for zebrafish embryos
Biol Open 2021 Sep 15;10(9):bio058513. doi: 10.1242/bio.058513.

2020

Barlow IL, Mackay E, Wheater E, Goel A, Lim S, Zimmerman S, Woods I, Prober DA, Rihel J (preprint).
A genetic screen identifies dreammist as a regulator of sleep.
bioRxiv 2020.11.18.388736; doi: https://doi.org/10.1101/2020.11.18.388736

Rihel J (2020).
Sleep Across the Animal Kingdom. in Sleep Science
Oxford University Press, pages 15-31

Ozcan GG, Lim S, Leighton PLA, Allison WT, Rihel J (2020).
Sleep is bi-directionally modified by amyloid beta oligomers.
Elife Jul 14;9:e53995. doi: 10.7554/eLife.53995

Haas AJ, Zhini C, Ruppel A, Hartmann C, Ebnet K, Tada M, Balda M, Matter K (2020)
Interplay between extracellular matrix stiffness and JAM-A regulates mechanical load on ZO-1 and tight junction assembly.
Cell Reports 32, 107924.

Griffiths VA, Valera AM, Lau JYN, Ros H, Marin B, Baragli C, Coyle D, Evans GJ, Konstantinou G, Younts TJ, Koimtzis T, Srinivas Nadella KMN, Kirkby PA, Bianco IH and Silver RA.
Real-time 3D movement correction for two-photon imaging in behaving animals.
Nat Methods (2020). doi.org/10.1038/s41592-020-0851-7

Hande Tunbak, Mireya Vazquez-Prada, Thomas Ryan, Adam R. Kampff and Elena Dreosti
Whole-brain mapping of socially isolated zebrafish reveals that lonely fish are
not loners.
eLife (2020);9:e55863 DOI: 10.7554/eLife.55863

Mione MC, Blader P, Del Bene F, Trompouki E and Bianco IH.
Perspectives in zebrafish research.
Frontiers in Cell and Developmental Biology (2020)

Ghosh M and Rihel J
Hierarchical compression reveals sub-second to day-long structure in larval zebrafish behaviour.
eNeuro(2020). https://doi.org/10.1523/ENEURO.0408-19.2020

Dreosti E, Hoffman EJ, and Rihel J
Modelling autism spectrum disorders in zebrafish.
In: Gerlai RT (ed). Behavioral and Neural Genetics of Zebrafish(2020). San Diego: Elsevier Inc./Academic Press: pp-pp. 451-471

Lyons DG and Rihel J
Sleep circuits and physiology in non-mammalian systems.
Current Opinion in Physiology (2020).https://doi.org/10.1016/j.cophys.2020.03.006

Antinucci P*, Dumitrescu AS*, Deleuze C, Morley HJ, Leung K, Hagley T, Kubo F, Baier H, Bianco IH*, Wyart C*. A calibrated optogenetic toolbox of stable zebrafish opsin lines.
eLife (2020) 9:e54937 10.7554/eLife.54937

Folgueira M, Riva-Mendoza S, Ferreño-Galmán N, Castro A, Bianco IH, Anadón R and Yáñez J. Anatomy and Connectivity of the Torus Longitudinalis of the Adult Zebrafish.
Front. Neural Circuits (2020) 14:8. doi:10.3389/fncir.2020.00008

2019

Schwayer C, Shamipour S, Pranjic-Ferscha K, Schauer A, Balda M, Tada M, Matter K, Heisenberg CP (2019)
Mechanosensation of tight junctions depends on ZO-1 phase separation and flow.
Cell 179, 937-952.

Gebhardt C, Auer TO, Henriques PM, Rajan G, Duroure K, Bianco IH*, Del Bene F*.
An interhemispheric neural circuit allowing binocular integration in the optic tectum.
Nature Communications (2019) 10, 5471.
doi:10.1038/s41467-019-13484-9

Gebhardt C, Auer TO, Henriques PM, Rajan G, Duroure K, Bianco IH*, Del Bene F*.
An interhemispheric neural circuit allowing binocular integration in the optic tectum.
Nature Communications (2019) 10, 5471.
doi:10.1038/s41467-019-13484-9

Shibata-Germanos, S., Goodman, J.R., Grieg, A. et al.
Structural and functional conservation of non-lumenized lymphatic endothelial cells in the mammalian leptomeninges.
Acta Neuropathol (2019). https://doi.org/10.1007/s00401-019-02091-z

Antinucci P, Folgueira M, Bianco IH.
Pretectal neurons control hunting behaviour.
eLife (2019) 8 doi.org/10.7554/eLife.48114

Sabine Reichert, Oriol Pavón Arocas, Jason Rihel
The Neuropeptide Galanin Is Required for Homeostatic Rebound Sleep following Increased Neuronal Activity
Neuron (2019) DOI:https://doi.org/10.1016/j.neuron.2019.08.010

Ingrid Lekk , Véronique Duboc, Ana Faro, Stephanos Nicolaou, Patrick Blader, Stephen W Wilson.
Sox1a mediates the ability of the parapineal to impart habenular left-right asymmetry.
eLife 2019;8:e47376 DOI: 10.7554/eLife.47376

Henriques PM, Rahman N, Jackson SE, Bianco IH.
Nucleus Isthmi is required to sustain target pursuit during visually guided prey-catching.
Current Biology (2019) 29:1771-1786. doi.org/10.1016/j.cub.2019.04.064

Lau JYN, Bianco IH, Severi KE.
Cellular-level understanding of supraspinal control: what can be learned from zebrafish?
Curr Opin Physiol (2019) 8:141 doi.org/10.1016/j.cophys.2019.01.013

Young RM, Hawkins TA, Cavodeassi F, Stickney HL, Schwarz Q, Lawrence LM, Wierzbicki C, Cheng BY, Luo J, Ambrosio EM, Klosner A, Sealy IM, Rowell J, Trivedi CA, Bianco IH, Allende ML, Busch-Nentwich EM, Gestri G, Wilson SW.
Compensatory growth renders Tcf7l1a dispensable for eye formation despite its requirement in eye field specification.
Elife. (2019) 8. doi: 10.7554/eLife.40093

Turner KJ, Hoyle J, Valdivia LE, Cerveny KL, Hart W, Mangoli M, Geisler R, Rees M, Houart C, Poole RJ, Wilson SW, Gestri G.
Abrogation of Stem Loop Binding Protein (Slbp) function leads to a failure of cells to transition from proliferation to differentiation, retinal coloboma and midline axon guidance deficits.
PLoS One. 2019 Jan 29;14(1):e0211073. doi: 10.1371/journal.pone.0211073. eCollection 2019.

2018

Anton KA, Kajita M, Narumi R, Fujita Y, Tada M.
Src-transformed cells hijack mitosis to extrude from the epithelium.
Nat Commun. 2018 Nov 8;9(1):4695. doi: 10.1038/s41467-018-07163-4.

Dahimene S1, Page KM1, Kadurin I1, Ferron L1, Ho DY1, Powell GT2, Pratt WS1, Wilson SW2, Dolphin AC3.
The α2δ-like Protein Cachd1 Increases N-type Calcium Currents and Cell Surface Expression and Competes with α2δ-1.
Cell Rep. 2018 Nov 6;25(6):1610-1621.e5. doi: 10.1016/j.celrep.2018.10.033.

Roussigné M, Wei L, Tsingos E, Kuchling F, Alkobtawi M, Tsalavouta M, Wittbrodt J, Carl M, Blader P, Wilson SW. (2018)
Left/right asymmetric collective migration of parapineal cells is mediated by focal FGF signaling activity in leading cells.
Proc Natl Acad Sci U S A. 2018 Oct 3. pii: 201812016. doi: 10.1073/pnas.1812016115.

Ashlin TG, Blunsom NJ, Ghosh M, Cockcroft S, Rihel J.
Pitpnc1a Regulates Zebrafish Sleep and Wake Behavior through Modulation of Insulin-like Growth Factor Signaling.
Cell Rep. 24(6):1389-1396. doi: 10.1016/j.celrep.2018.07.012

Gaia Gestri, Naiara Bazin-Lopez, Clarissa Scholes and Stephen W. Wilson (2018)
Cell Behaviors during Closure of the Choroid Fissure in the Developing Eye.
Frontiers in Cellular Neuroscience. doi.org/10.3389/fncel.2018.00042

Anna M. Krasnow  1, Marc C. Ford  , Leonardo E. Valdivia, Stephen W. Wilson  and David Attwell (2018)
Regulation of developing myelin sheath elongation by oligodendrocyte calcium transients in vivo
Nature Neuroscience.doi:10.1038/s41593-017-0031-y

2017

Singh C, Rihel J, and Prober DA (2017).
Neuropeptide Y Regulates Sleep by Modulating Noradrenergic Signaling. 
Current Biology, doi.org/10.1016/j.cub.2017.11.018

Schoppik D, Bianco IH, Prober DA, Douglass AD, Robson DN, Li JMB, Greenwood JSF, Soucy E, Engert F, Schier AF.
Gaze-stabilizing central vestibular neurons project asymmetrically to extraocular motoneuron pools. 
J Neurosci. (2017) pii: 1711-17. doi: 10.1523/JNEUROSCI.1711-17.2017

Wolf S, Dubreuil AM, Bertoni T, Böhm UL, Bormuth V, Candelier R, Karpenko S, Hildebrand DGC, Bianco IH, Monasson R, Debrégeas G.
Sensorimotor computation underlying phototaxis in zebrafish.
Nat Commun. (2017) 8:651. doi: 10.1038/s41467-017-00310-3.

Hildebrand DGC, Cicconet M, Torres RM, Choi W, Quan TM, Moon J, Wetzel AW, Scott Champion A, Graham BJ, Randlett O, Plummer GS, Portugues R, Bianco IH, Saalfeld S, Baden AD, Lillaney K, Burns R, Vogelstein JT, Schier AF, Lee WA, Jeong WK, Lichtman JW, Engert F. 
Whole-brain serial-section electron microscopy in larval zebrafish. 
Nature (2017). doi:10.1038/nature22356

Chen S, Reichert S, Singh C, Oikonomou G, Rihel J*, and Prober DA* (2017).
Light-dependent regulation of sleep/wake states by prokineticin 2 in zebrafish.
Neuron. http://dx.doi.org/10.1016/j.neuron.2017.06.001. *co-corresponding

Van Lessen M, Shibata-Germanos S, van Impel A, Hawkins TA, Rihel J, and Schulte-Merker S (2017). Intracellular uptake of macromolecules by brain lymphatic endothelial cells during zebrafish embryonic development. 
eLife DOI: http://dx.doi.org/10.7554/eLife.25932

Barlow IL and Rihel J (2017).
Zebrafish sleep: from geneZZZ to neuronZZZ. Current Opinion in Neurobiology, 10.1016/j.conb.2017.02.009

Stainier DYR, Raz E, Lawson ND, Ekker SC, Burdine RD, Eisen JS, Ingham PW, Schulte-Merker S, Yelon D, Weinstein BM, Mullins MC, Wilson SW, Ramakrishnan L, Amacher SL, Neuhauss SCF, Meng A, Mochizuki N, Panula P, Moens CB.(2017)
Guidelines for morpholino use in zebrafish.
Plos Genetics. 2017 Oct 19;13(10):e1007000. doi: 10.1371/journal.pgen.1007000.

Shainier, I., Buchshtab, A., Hawkins, T.A., Wilson, S.W., Cone, R.D., and Gothilf, Y. (2017)
Novel hypophysiotropic AgRP2 neurons and pineal cells revealed by BAC transgenesis in zebrafish.
Sci Rep.  2017 Mar 20;7:44777. doi: 10.1038/srep44777.

2016

Karin Tuschl, Esther Meyer, Leonardo E. Valdivia, Ningning Zhao, Chris Dadswell, Alaa Abdul-Sada, Christina Y. Hung, Michael A. Simpson, W. K. Chong, Thomas S. Jacques, Randy L. Woltjer, Simon Eaton, Allison Gregory, Lynn Sanford, Eleanna Kara, Henry Houlden, Stephan M. Cuno, Holger Prokisch, Lorella Valletta, Valeria Tiranti, Rasha Younis, Eamonn R. Maher, John Spencer, Ania Straatman-Iwanowska, Paul Gissen, Laila A. M. Selim, Guillem Pintos-Morell, Wifredo Coroleu-Lletget, Shekeeb S. Mohammad, Sangeetha Yoganathan, Russell C. Dale, Maya Thomas, Jason Rihel, Olaf A. Bodamer, Caroline A. Enns, Susan J. Hayflick, Peter T. Clayton, Philippa B. Mills, Manju A. Kurian & Stephen W. Wilson (2016)
Mutations in SLC39A14 disrupt manganese homeostasis and cause childhood-onset parkinsonism-dystonia
Nat Commun. 2016 Jun 10

Turner, K. J., Hawkins, T. A., Yáñez, J., Anadón, R., Wilson, S. W., & Folgueira, M (2016)
Afferent Connectivity of the Zebrafish Habenulae
Front Neural Circuits. 2016 Apr 26;10:30. doi: 10.3389/fncir.2016.00030. eCollection 2016.

Gaston-Massuet C, McCabe MJ, Scagliotti V, Young RM, Carreno G, Gregory LC, Jayakody SA, Pozzi S, Gualtieri A, Basu B, Koniordou M, Wu CI, Bancalari RE, Rahikkala E, Veijola R, Lopponen T, Graziola F, Turton J, Signore M, Mousavy Gharavy SN, Charolidi N, Sokol SY, Andoniadou CL, Wilson SW, Merrill BJ, Dattani MT, Martinez-Barbera JP. (2016)
Transcription factor 7-like 1 is involved in hypothalamo-pituitary axis development in mice and humans. Proc Natl Acad Sci U S A. 2016 Jan 13. pii: 201503346.

Naumann E, Fitzgerald JE, Dunn TW, Rihel J, Sompolinsky H, and Engert F (2016).
From Whole-Brain Data to Functional Circuit Models: The Zebrafish Optomotor Response. 
Cell, 167(4):947-960.

Chiu CN*, Rihel J*, Lee DA, Singh C, Mosser EA, Chen S, Sapin S, Engle J, Niles BJ, Montz CJ, Chakravarthy S, Salehi-Ashtiani K, Vidal M, Schier AF, Prober DA. (2016)
A zebrafish genetic screen identifies neuromedin U as a regulator of sleep/wake states. 
Neuron 89(4):842-856. *co-first author

Hoffman EJ, Turner KJ, Fernandez JM, Cifuentes D, Ghosh M, Ijaz S, Jain RA, Kubo F, Bill BR, Baier H, Granato M, Barresi MJ, Wilson SW, Rihel J, State MW, Giraldez AJ. (2016)
Estrogens Suppress a Behavioral Phenotype in Zebrafish Mutants of the Autism Risk Gene, CNTNAP2.
Neuron. 2016 Jan 27. pii: S0896-6273(15)01167-8. doi: 10.1016/j.neuron.2015.12.039.

Hemanth Tummala, Amanda J Walne, Mike Williams, Nicholas Bockett, Laura Collopy, Shirleny Cardoso, Alicia Ellison, Rob Wynn,  Thierry Leblanc, Jude Fitzgibbon,  David P Kelsell, David A van Heel, Elspeth Payne, Vincent Plagnol, Inderjeet Dokal* and Tom Vulliamy*(2016)
DNAJC21 mutations link a cancer prone bone marrow failure syndrome to corruption in 60S ribosome subunit maturation.
Am J Hum Genet. 2016 Jul 7;99(1):115-24.

Leonardo E. Valdivia, Dayna B. Lamb, Wilson Horner, Claudia Wierzbicki, Amanuel Tafessu, Audrey M. Williams, Gaia Gestri, Anna M. Krasnow, Terra S. Vleeshouwer-Neumann, McKenzie Givens, Rodrigo M. Young, Lisa M. Lawrence, Heather L. Stickney, Thomas A. Hawkins, Quenten P. Schwarz, Florencia Cavodeassi, Stephen W. Wilson, Kara L. Cerveny (2016) Antagonism between Gdf6a and retinoic acid pathways controls timing of retinal neurogenesis and growth of the eye in zebrafish. Development 2016 143: 1087-1098; doi: 10.1242/dev.130922

Zou M, Friedrich RW,, Bianco IH. (2016)
Targeted Electroporation in Embryonic, Larval, and Adult Zebrafish.
Methods Mol Biol. 2016;1451:259-69. doi: 10.1007/978-1-4939-3771-4_17.

Chiu CN, Rihel J, Lee DA, Singh C, Mosser EA, Chen S, Sapin V, Pham U, Engle J, Niles BJ, Montz CJ, Chakravarthy S, Zimmerman S, Salehi-Ashtiani K, Vidal M, Schier AF, Prober DA. (2016)
A Zebrafish Genetic Screen Identifies Neuromedin U as a Regulator of Sleep/Wake States.
Neuron. 2016 Feb 17;89(4):842-56. doi: 10.1016/j.neuron.2016.01.007.

2015

Bazin-Lopez N, Valdivia LE, Wilson SW, Gestri G (2015)
Watching eyes take shape
Curr Opin Genet Dev. 2015 Mar 3;32C:73-79. doi: 10.1016/j.gde.2015.02.004.

Lopes G, Bonacchi N, Frazão J, Neto JP, Atallah BV, Soares S, Moreira L, Matias S, Itskov PM, Correia PA, Medina RE, Calcaterra L, Dreosti E, Paton JJ, Kampff AR. (2015)
Bonsai: an event-based framework for processing and controlling data streams.
Front Neuroinform. 2015 Apr 8;9:7. doi: 10.3389/fninf.2015.00007. eCollection 2015.

Sibley CR, Emmett W, Blazquez L, Faro A, Haberman N, Briese M, Trabzuni D, Ryten M, Weale ME, Hardy J, Modic M, Curk T, Wilson SW, Plagnol V, Ule J. (2015)
Recursive splicing in long vertebrate genes.
Nature. 2015 May 21;521(7552):371-5. doi: 10.1038/nature14466

Naville M, Ishibashi M, Ferg M, Bengani H, Rinkwitz S, Krecsmarik M, Hawkins TA, Wilson SW, Manning E, Chilamakuri CS, Wilson DI, Louis A, Lucy Raymond F, Rastegar S, Strähle U, Lenhard B, Bally-Cuif L, van Heyningen V, FitzPatrick DR, Becker TS, Roest Crollius H. (2015)
Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome.
Nat Commun. 2015 Apr 24;6:6904. doi: 10.1038/ncomms7904.

Fantin A, Lampropoulou A, Gestri G, Raimondi C, Senatore V, Zachary I, Ruhrberg C. (2015)
NRP1 Regulates CDC42 Activation to Promote Filopodia Formation in Endothelial Tip Cells.
Cell Rep. 2015 Jun 3. pii: S2211-1247(15)00530-6. doi: 10.1016/j.celrep.2015.05.018.

Ramezani T, Laux DW, Bravo IR, Tada M, Feng Y. (2015)
Live imaging of innate immune and preneoplastic cell interactions using an inducible Gal4/UAS expression system in larval zebrafish skin.
J Vis Exp. 2015 Feb 3;(96). doi: 10.3791/52107.

Jason Rihel, Marcus Ghosh (2015)
Zebrafish.In Drug Discovery and Evaluation: Pharmacological Assays pp 1-102

Rihel J, Bendor D. (2015)
Flies Sleep on It, or Fuhgeddaboudit!
Cell. 2015 Jun 18;161(7):1498-500. doi: 10.1016/j.cell.2015.06.011.

Dreosti E, Lopes G, Kampff AR, Wilson SW (2015)
Development of social behavior in young zebrafish.
Front Neural Circuits 2015 Aug 18;9:39. doi: 10.3389/fncir.2015.00039

Hernández-Bejarano M, Gestri G, Spawls L, Nieto-López F, Picker A, Tada M, Brand M, Bovolenta P, Wilson SW, Cavodeassi F. (2015)
Opposing Shh and Fgf signals initiate nasotemporal patterning of the zebrafish retina.
Development. 2015 Nov 15;142(22):3933-42. doi: 10.1242/dev.125120.

Miesfeld JB, Gestri G, Clark BS, Flinn MA, Poole RJ, Bader JR, Besharse JC, Wilson SW, Link BA. (2015)
Yap and Taz regulate retinal pigment epithelial cell fate.
Development. 2015 Sep 1;142(17):3021-32. doi: 10.1242/dev.119008.

Ishibashi M, Manning E, Shoubridge C, Krecsmarik M, Hawkins TA, Giacomotto J, Zhao T, Mueller T, Bader PI, Cheung SW, Stankiewicz P, Bain NL, Hackett A, Reddy CC, Mechaly AS, Peers B, Wilson SW, Lenhard B, Bally-Cuif L, Gecz J, Becker TS, Rinkwitz S. (2015)
Copy number variants in patients with intellectual disability affect the regulation of ARX transcription factor gene.
Hum Genet. 2015 Nov;134(11-12):1163-82. doi: 10.1007/s00439-015-1594-x

Davies WI, Tamai TK, Zheng L, Fu JK, Rihel J, Foster RG, Whitmore D, Hankins MW. (2015)
An extended family of novel vertebrate photopigments is widely expressed and displays a diversity of function.
Genome Res. 2015 Nov;25(11):1666-79. doi: 10.1101/gr.189886.115

2014

Dreosti E, Vendrell Llopis N, Carl M, Yaksi E, Wilson SW. (2014)
Left-Right Asymmetry Is Required for the Habenulae to Respond to Both Visual and Olfactory Stimuli.
Curr Biol. 2014 Feb 5. pii: S0960-9822(14)00017-7. doi: 10.1016/j.cub.2014.01.016. [Epub ahead of print]

Cardozo MJ, Sánchez-Arrones L, Sandonis A, Sánchez-Camacho C, Gestri G, Wilson SW, Guerrero I, Bovolenta P. (2014)
Cdon acts as a Hedgehog decoy receptor during proximal-distal patterning of the optic vesicle.
Nat Commun. 2014 Jul 8;5:4272. doi: 10.1038/ncomms5272.

Turner KJ, Bracewell TG, Hawkins TA. (2014)
Anatomical dissection of zebrafish brain development.
Methods Mol Biol. 2014;1082:197-214. doi: 10.1007/978-1-62703-655-9_14.

Hüsken U, Stickney HL, Gestri G, Bianco IH, Faro A, Young RM, Roussigne M, Hawkins TA, Beretta CA, Brinkmann I, Paolini A, Jacinto R, Albadri S, Dreosti E, Tsalavouta M, Schwarz Q, Cavodeassi F, Barth AK, Wen L, Zhang B, Blader P, Yaksi E, Poggi L, Zigman M, Lin S, Wilson SW, Carl M. (2014)
Tcf7l2 is required for left-right asymmetric differentiation of habenular neurons.
Curr Biol. 2014 Oct 6;24(19):2217-27. doi: 10.1016/j.cub.2014.08.006.

Poccia N, Campi G, Ricci A, Caporale AS, Di Cola E, Hawkins TA, Bianconi A. (2014)
Changes of statistical structural fluctuations unveils an early compacted degraded stage of PNS myelin.
Sci Rep. 2014 Jun 25;4:5430. doi: 10.1038/srep05430.

Ozcan GG, Rihel J. (2014)
A Drosophila circuit feels the (sleep) pressure.
Neuron. 2014 Feb 19;81(4):720-2. doi: 10.1016/j.neuron.2014.02.002.

Anupama Narla*, Elspeth Payne*, Nirmalee Abayasekara et al.(2014)
L-leucine improves the anemia in models of Diamond-Blackfan anemia and the 5q- syndrome in a p53-independent way.
Br J Haematol. 2014 Aug 7

2013

Fodor E, Zsigmond A, Horváth B, Molnár J, Nagy I, Tóth G, Wilson SW, Varga M. (2013)
Full transcriptome analysis of early dorsoventral patterning in zebrafish.
PLoS One. 2013 Jul 29;8(7):e70053.

Cavodeassi F, Ivanovitch K, Wilson SW. (2013)
Eph/Ephrin signalling maintains eye field segregation from adjacent neural plate territories during forebrain morphogenesis.
Development. 2013 Oct;140(20):4193-202.

Ivanovitch K, Cavodeassi F, Wilson SW (2013)
Precocious Acquisition of Neuroepithelial Character in the Eye Field Underlies the Onset of Eye Morphogenesis
Developmental Cell, October 2013

Rihel, Jason (2013)
Resolving the neuropharmacology of zebrafish sleep (no link available)
Toxicology Letters Volume: 221 Pages: S44-S45

Jason Rihel, Alexander F Schier (2013)
Sites of action of sleep and wake drugs: insights from model organisms
Current Opinion in Neurobiology 23 (5): 831–840

Mahmood F, Fu S, Cooke J, Wilson SW, Cooper JD, Russell C. (2013)
A zebrafish model of CLN2 disease is deficient in tripeptidyl peptidase 1 and displays progressive neurodegeneration accompanied by a reduction in proliferation.
Brain. 2013 May;136(Pt 5):1488-507

Colombo A, Palma K, Armijo L, Mione M, Signore IA, Morales C, Guerrero N, Meynard MM, Pérez R, Suazo J, Marcelain K, Briones L, Härtel S, Wilson SW, Concha ML. (2013)
Daam1a mediates asymmetric habenular morphogenesis by regulating dendritic and axonal outgrowth.
Development. 2013 Oct;140(19):3997-4007.

Peyric, Elodie; Moore, Helen A.; Whitmore, David (2013)
Circadian Clock Regulation of the Cell Cycle in the Zebrafish Intestine
Plos One Volume: 8 Issue: 8

Laranjeiro, Ricardo; Tamai, T. Katherine; Peyric, Elodie; et al. (2013)
Cyclin-dependent kinase inhibitor p20 controls circadian cell-cycle timing
Proceedings of the National Academy of Sciences of the United States of America Volume: 110 Issue: 17 Pages: 6835-6840

Hirata, Hiromi; Ogino, Kazutoyo; Yamada, Kenta; Robert J. Harvey (2013)
Defective Escape Behavior in DEAH-Box RNA Helicase Mutants Improved by Restoring Glycine Receptor Expression
Journal of Neuroscience Volume: 33 Issue: 37 Pages: 14638-14644

Mahmood F, Mozere M, Zdebik AA, Stanescu HC, Tobin J, Beales PL, Kleta R, Bockenhauer D, Russell C. (2013)
Generation and validation of a zebrafish model of EAST (epilepsy, ataxia, sensorineural deafness and tubulopathy) syndrome
Disease Models & Mechanisms Volume: 6 Issue: 3 Pages: 652-660

2012

Roussigne, Myriam; Blader, Patrick; Wilson, Stephen W (2012)
Breaking symmetry: The zebrafish as a model for understanding left-right asymmetry in the developing brain
Developmental Neurobiology 72-3: 269-281

K. Cerveny; M. Varga; SW Wilson. (2012)
Continued growth and circuit building in the anamniote visual system
Developmental Neurobiology 72-3: 328-345

Aya Takesono, Julian Moger, Sumera Faroq, Emma Cartwright, Igor B. Dawid, S. W. Wilson and Tetsuhiro Kudoh (2012)
Solute carrier family 3 member 2 (Slc3a2) controls yolk syncytial layer (YSL) formation by regulating microtubule networks in the zebrafish embryo
Proceedings of the National Academy of Sciences of the United States of America 109-9: 3371-3376

Chiavacci E, Dolfi L, Verduci L, Meghini F, Gestri G, Evangelista AM, Wilson SW, Cremisi F, Pitto L (2012)
MicroRNA 218 Mediates the Effects of Tbx5a Over-Expression on Zebrafish Heart Development.
PLoS One. 2012;7(11)

Berman J, Payne E, Hall C.(2012)
Advances in Hematology, Special Issue on The Zebrafish as a Tool to Study Hematopoiesis, Human Blood Diseases and Immune Function
Adv Hematol. Oct 2012:425345.

Folgueira M, Bayley P, Navratilova P, Becker TS, Wilson SW, Clarke JD. (2012)
Morphogenesis underlying the development of the everted teleost telencephalon.
Neural Dev. 2012 Sep 18;7(1):32. [Epub ahead of print]

Payne EM, Virgilio M, Narla A, et al.(2012)
L-Leucine Improves the Anemia and Developmental Defects Associated With Diamond-Blackfan Anemia and del(5q) MDS by Activating the mTOR Pathway
Blood. 2012 Sep 13;120(11):2214-24.

Forrester AM, Berman JN, Payne EM.(2012)
Myelopoiesis and myeloid leukaemogenesis in the zebrafish
Adv Hematol. July 2012;2012:358518.

Concha ML, Bianco IH, Wilson SW. (2012)
Encoding asymmetry within neural circuits.
Nat Rev Neurosci. 2012 Dec;13(12):832-43.

Engert F, Wilson SW. (2012)
Zebrafish neurobiology: from development to circuit function and behaviour.
Dev Neurobiol. 2012 Mar;72(3):215-7.

Andreazzoli M, Gestri G, Landi E, D'Orsi B, Barilari M, Iervolino A, Vitiello M, Wilson SW, Dente L. (2012)
Kidins220/ARMS interacts with Pdzrn3, a protein containing multiple binding domains.
Biochimie. 2012 Sep;94(9):2054-7.

Lee, Okhyun; Takesono, Aya; Tada, Masazumi; et al. (2012)
Biosensor Zebrafish Provide New Insights into Potential Health Effects of Environmental Estrogens
Environmental Health Perspectives Volume: 120 Issue: 7 Pages: 990-996

Tada, Masazumi; Heisenberg, Carl-Philipp (2012)
Convergent extension: using collective cell migration and cell intercalation to shape embryos
Development Volume: 139 Issue: 21 Pages: 3897-3904

Tada, Masazumi; Kai, Masatake (2012)
Planar Cell Polarity in Coordinated and Directed Movements
Curr Top Dev Biol. 2012;101:77-110

Powell, G. T. and Wright, G. J. (2012)
Do vertebrate founder cells exist?
Trends in Cell Biology 22: 391-396.

Tamai, T.K., Young, L.C., Cox, C.A., Whitmore, D. (2012)
Light acts on the zebrafish circadian clock to suppress rhythmic mitosis and cell proliferation
Journal of Biological Rhythms

Jason Rihel, Alexander F. Schier (2012)
Behavioral screening for neuroactive drugs in zebrafish
Developmental Neurobiology 72-3: 373-385

Norman M, Wisniewska KA, Lawrenson K, Garcia-Miranda P, Tada M, Kajita M, Mano H, Ishikawa S, Ikegawa M, Shimada T, Fujita Y. (2012)
Loss of Scribble causes cell competition in mammalian cells
Journal of Cell Science 125-1: 59-66

Moro E, Ozhan-Kizil G, Mongera A, Beis D, Wierzbicki C, Young RM, Bournele D, Domenichini A, Valdivia LE, Lum L, Chen C, Amatruda JF, Tiso N, Weidinger G, Argenton F. (2012)
In vivo Wnt signaling tracing through a transgenic biosensor fish reveals novel activity domains.
Dev Biol, 366 (2), 327-340

Gestri G, Link BA, Neuhauss SC. (2012)
The visual system of zebrafish and its use to model human ocular diseases.
Dev Neurobiol. 2012 Mar;72(3):302-27.

2011

Lupo G, Gestri G, O'Brien M, Denton RM, Chandraratna RA, Ley SV, Harris WA, Wilson SW. (2011)
Retinoic acid receptor signaling regulates choroid fissure closure through independent mechanisms in the ventral optic cup and periocular mesenchyme
Proc Natl Acad Sci U S A. 108(21):8698-703. Epub 2011 May 9.

Valdivia LE, Young RM, Hawkins TA, Stickney HL, Cavodeassi F, Schwarz Q, Pullin LM, Villegas R, Moro E, Argenton F, Allende ML, Wilson SW. (2011)
Lef1-dependent Wnt/{beta}-catenin signalling drives the proliferative engine that maintains tissue homeostasis during lateral line development.
Development. 2011 Sep;138(18):3931-41

Cynthia L Andoniadou, Massimo Signore, Rodrigo M. Young, Carles Gaston-Massuet, Elaine Fuchs, Stephen W. Wilson, and Juan Pedro Martinez-Barbera (2011)
HESX1 and TCF3 mediated repression of Wntß-catenin targets is required for normal development of the anterior forebrain.
Development, In press

Luciana Dente, Gaia Gestri, Michael Tsang, Tetsuhiro Kudoh, S. W. Wilson, Igor B. Dawid and Massimiliano Andreazzoli (2011)
Cloning and developmental expression of zebrafish pdzrn3
Int. J. Dev. Biol. 55: 989 - 993

Marcel Tawk, Joelle Makoukji, Martin Belle, Cosima Fonte, Amalia Trousson, Thomas Hawkins, Huiliang Li, Said Ghandour, Michael Schumacher, and Charbel Massaad (2011)
Wnt/{beta}-Catenin Signaling Is an Essential and Direct Driver of Myelin Gene Expression and Myelinogenesis
J. Neuroscience 31 3729-3742

Castranova D, Lawton A, Lawrence C, Baumann DP, Best J, Coscolla J, Doherty A, Ramos J, Hakkesteeg J, Wang C, Wilson C, Malley J, Weinstein BM. (2011)
The Effect of Stocking Densities on Reproductive Performance in Laboratory Zebrafish (Danio rerio)
Zebrafish, Volume 8, Number 3

Davies WI, Zheng L, Hughes S, Tamai TK, Turton M, Halford S, Foster RG, Whitmore D, Hankins MW. (2011)
Functional diversity of melanopsins and their global expression in the teleost retina.
Cell and Molecular Life Sciences. Aug 11 (Epub ahead of print)

Carmona-Fontaine C, Theveneau E, Tzekou A, Tada M, Woods M, Page KM, Parsons M, Lambris JD, Mayor R. (2011)
Complement Fragment C3a Controls Mutual Cell Attraction during Collective Cell Migration
Developmental Cell 21-6: 1026-1037

Georgios Trichas, Bradley Joyce, Lucy A. Crompton, Vivienne Wilkins, Melanie Clements, Masazumi Tada, Tristan A. Rodriguez, Shankar Srinivas (2011)
Nodal Dependent Differential Localisation of Dishevelled-2 Demarcates Regions of Differing Cell Behaviour in the Visceral Endoderm
Plos Biology 9-2

Clark MD, Guryev V, Bruijn E, Nijman IJ, Tada M, Wilson C, Deloukas P, Postlethwait JH, Cuppen E, Stemple DL (2011)
Single Nucleotide Polymorphism (SNP) Panels for Rapid Positional Cloning in Zebrafish
Methods in Cell Biology 104-104: 221-235

Martin-Robles AJ, Isorna E, Whitmore D, Munoz-Cueto JA, Pendon C. (2011)
The clock gene Period3 in the nocturnal flatfish Solea senegalensis: Molecular cloning, tissue expression and daily rhythms in central areas
Comparative Biochemistry and Physiology a-Molecular & Integrative Physiology 159-1: 7-15

Oni M. Mapp, Gregory S. Walsh, Cecilia B. Moens, Masazumi Tada and Victoria E. Prince (2011)
Zebrafish Prickle1b mediates facial branchiomotor neuron migration via a farnesylation-dependent nuclear activity
Development Volume 138-10: 2121-2132

2010

Cruz, C., Maegawa, S., Eric S. Weinberg, S. W. Wilson, Igor B. Dawid, and T. Kudoh (2010)
Induction and patterning of trunk and tail neural ectoderm by the homeobox gene eve1 in zebrafish embryos
PNAS 107(8):3564-3569

Fantin A, Vieira JM, Gestri G, Denti L, Schwarz Q, Prykhozhij S, Peri F, Wilson SW, Ruhrberg C (2010)
Tissue macrophages act as cellular chaperones for vascular anastomosis downstream of VEGF-mediated endothelial tip cell induction
Blood. 2010 Apr 19. [Epub ahead of print]

Cerveny, K.L., Cavodeassi, F., K. J. Turner, T. A. de Jong-Curtain, J. K. Heath, and S. W. Wilson (2010)
The zebrafish flotte lotte mutant reveals that the local retinal environment promotes the differentiation of proliferating precursors emerging from their stem cell niche
Development 137: 2107-2115

Markus Tschopp, Masanari Takamiya, Kara L. Cerveny, Gaia Gestri, Oliver Biehlmaier, Stephen W. Wilson, Uwe Strähle, Stephan C. F. Neuhauss (2010)
Funduscopy in Adult Zebrafish and Its Application to Isolate Mutant Strains with Ocular Defects
PLoS ONE 5(11): e15427.

Ewan K, Pajak B, Stubbs M, Todd H, Barbeau O, Quevedo C, Botfield H, Young RM, Ruddle R, Samuel L, Battersby A, Raynaud F, Allen N, Wilson S, Latinkic B, Workman P, McDonald E, Blagg J, Aherne W, Dale T. (2010)
A useful approach to identify novel small-molecule inhibitors of Wnt-dependent transcription.
Cancer Res. 2010 Jul 15;70(14):5963-73

Kajita, M. C. Hogan, Andrew R. Harris, Sophie Dupre-Crochet, Nobue Itasaki, Koichi Kawakami, Guillaume Charras, Masazumi Tada and Yasuyuki Fujita (2010)
Interaction with surrounding normal epithelial cells influences signalling pathways and behaviour of Src- transformed cells
Journal of Cell Science 123:171-180

Alexandre, P, Reugels, A, Barker, D, Blanc, E and Clarke, JDW (2010)
Neurons derive from the more apical daughter in asymmetric divisions in the zebrafish neural tube
Nature Neuroscience in press (DOI number 10.1038/nn.2547)

Hirata H, Carta E, Yamanaka I, Harvey RJ, Kuwada JY (2010)
Defective glycinergic synaptic transmission in zebrafish motility mutants
Front Mol Neurosci 2:26

Ogino K, Ramsden SL, Keib N, Schwarz G, Harvey RJ, Hirata H (2010)
Duplicated gephyrin genes showing distinct tissue distribution and alternative splicing patterns mediate Moco biosynthesis, glycine receptor clustering and escape behavior in zebrafish.
J Biol Chem [Epub ahead of print] PubMed PMID: 20843816

Tamori Y, Bialucha CU, Tian AG, Kajita M, Huang YC, Norman M, Harrison N, Poulton J, Ivanovitch K, Disch L, Liu T, Deng WM, Fujita Y. (2010)
Involvement of Lgl and Mahjong/VprBP in cell competition.
PLoS Biol. 13;8(7)

May-Simera HL, Kai M, Hernandez V, Osborn DP, Tada M, Beales PL. (2010)
Bbs8, together with the planar cell polarity protein Vangl2, is required to establish left-right asymmetry in zebrafish
Developmental Biology 345-2: 215-225

2009

Roussigné M, Bianco I.H, Wilson S.W, Blader P. (2009)
Nodal signalling imposes left-right asymmetry upon neurogenesis in the habenular nuclei
Development 136:1549-1557.

McMahon (*), C., Gestri, G. (*), Wilson, S.W. and Link, B.A. (2009)
Lmx1b is essential for survival of periocular mesenchymal cells and influences Fgf-mediated retinal patterning in zebrafish.
Dev Biol. 332(2):287-298.

Gestri G, Osborne RJ, Wyatt AW, Gerrelli D, Gribble S, Stewart H, Fryer A, Bunyan DJ, Prescott K, Collin JR, Fitzgerald T, Robinson D, Carter NP, Wilson SW, Ragge NK. (2009)
Reduced TFAP2A function causes variable optic fissure closure and retinal defects and sensitizes eye development to mutations in other morphogenetic regulators.
Hum Genet. 126:791-803.

Picker A, Cavodeassi F, Machate A, Bernauer S, Hans S, Abe, G., Kawakami, K., Wilson, S.W. and Brand, M. (2009)
Dynamic coupling of pattern formation and morphogenesis in the developing vertebrate retina
PLoS Biol 7(10)

Cavodeassi, F.; Kapsimali, M.; Wilson, S.W.; Young, R. (2009 )
Forebrain: early development
In L. R. Squire (editor) Encyclopedia of Neuroscience 4:321-325. Elsevier. Oxford:Academic Press.

Regan JC, Concha ML, Roussigne M, Russell C, Wilson SW (2009)
An Fgf8-dependent bistable cell migratory event establishes CNS asymmetry.
Neuron 61:27-34

Carreira-Barbosa,F.,Kajita,M.,Morel,V.,Wada,H.,Okamoto,H.,Martinez Arias,A.,Fujita,Y.,Wilson,S.W.,Tada,M. (2009)
Flamingo regulates epiboly and convergence/extension movements through cell cohesive and signalling functions during zebrafish gastrulation
Development 136:383-392

Bianco,I.H.,Wilson,S.W. (2009)
The habenular nuclei: a conserved asymmetric relay station in the vertebrate brain.
Philosophical Transactions of the Royal Society B:Biological Sciences, Epub ahead of print

Ferrante,M.I,Romio,L.,Castro,S.,Collins,J.E.,Goulding,D.A.,Stemple,D.L.,Woolf,A.S.,Wilson,S.W. (2009)
Convergent Extension Movements and Ciliary Function are Mediated by ofd1, A Zebrafish Orthologue of the Human Oral-Facial-Digital Type 1 Syndrome Gene.
Human Molecular Genetics 18:289-303

Castleman, V.H., Leila Romio L., Chodhari, R., Hirst, R.A., de Castro S.C.P., Parker, K.A., Ybot-Gonzalez, P., Emes, R.D., Wilson, S.W., Weber, A., Johnson, C.A., Herrera, R.J., Rutman A., Shoemark, A., Bush, A., Hogg, C., Gardiner, R.M., Reisch, O., Greene, N.D.E., O’Callaghan, C., Purton, S., Chung, E.M.K., Mitchison, H.M. (2009)
Mutations in radial spoke head protein genes RSPH9 and RSPH4A cause primary ciliary dyskinesia with central microtubular pair abnormalities
Am. J. Human Genetics 84:197-209

M. Tsalavouta, O. Astudillo, L. Byrnes, and C. M. Nolan. (2009)
Regulation of expression of zebrafish (Danio rerio) insulin-like growth factor 2 receptor: implications for evolution at the IGF2R locus
Evol. Dev.11: 546-557

Sala-Bozano M., Tsalavouta M. and Mariani S. (2009)
Development of 9 polymorphic microsatellite loci for population genetic studies of the striped sea bream Lithognathus mormyrus.
Conservation Genetics, 10: 1507-1509

Tada, M. and Kai, M. (2009)
Non-canonical Wnt/PCP signalling during vertebrate gastrulation
Zebrafish 6: 29-40

2008

Hawkins TA, Haramis AP, Etard C, Prodromou C, Vaughan CK, Ashworth R, Ray S, Behra M, Holder N, Talbot WS, Pearl LH, Strähle U, Wilson SW. (2008)
The ATPase-dependent chaperoning activity of Hsp90a regulates thick filament formation and integration during skeletal muscle myofibrillogenesis.
Development 135:1147-1156

Bianco IH, Carl M, Russell C, Clarke JD, Wilson SW. (2008)
Brain asymmetry is encoded at the level of axon terminal morphology.
Neural Development 3:9-27

Harvey, Robert J., Maya (2008)
Topf, Kirsten Harvey and Mark I. Rees (2008) The genetics of hyperekplexia: more than startle!
Trends in Genetics 24:439-447

Harvey RJ, Carta E, Pearce BR, Chung S, Supplisson S, Rees MI and Harvey K (2008)
A critical role for glycine transporters in hyperexcitability disorders
Front. Mol. Neurosci. 1:1-6

Quinlan RJ, Tobin JL, Beales PL (2008)
Chapter 5 modeling ciliopathies primary cilia in development and disease
Curr Top Dev Biol. 84:249-310

Tobin JL, Beales PL. (2008)
Restoration of renal function in zebrafish models of ciliopathies
Pediatr Nephrol. 23:2095-2099

Kosodo, Y., Toida, K., Dubreuil, V., Alexandre, P., Schenk, J., Kiyokage, E., Attardo, A., Mora-Bermúdez, F., Arii, T., Clarke, J. D. W. and Huttner, W.B. (2008)
Cytokinesis of neuroepithelial cells can divide their basal process before anaphase
EMBO Journal 27:3151-3163

Carmona-Fontaine, C., Matthews, H., Mayor, R. (2008)
Directional cell migration in vivo: Wnt at the crest
Cell Adhesion & Migration 2:240-242

Carmona-Fontaine C, Matthews HK, Kuriyama S, Moreno M, Dunn GA, Parsons M, Stern CD, Mayor R. (2008)
Contact inhibition of locomotion in vivo controls neural crest directional migration
Nature 456:957-961

Matthews HK, Marchant L, Carmona-Fontaine C, Kuriyama S, Larraín J, Holt MR, Parsons M, Mayor R. (2008)
Directional migration of neural crest cells in vivo is regulated by Syndecan-4/Rac1 and non-canonical Wnt signaling/RhoA
Development 135:1771-80

Kuriyama S, Mayor R. (2008)
Molecular analysis of neural crest migration
Philos Trans R Soc Lond B Biol Sci. 363:1349-62

Pocock R, Mione M, Hussain S, Maxwell S, Pontecorvi M, Aslam S, Gerrelli D, Sowden JC, Woollard A. (2008)
Neuronal function of Tbx20 conserved from nematodes to vertebrates
Dev Biol. 317:671-85

Hawkins,T.A., Cavodeassi,F., Erdélyi,F., Szabó,G., Lele,Z. (2008)
The small molecule Mek1/2 inhibitor U0126 disrupts the chordamesoderm to notochord transition in zebrafish.
BMC Developmental Biology 17:42-42

Kai,M., Heisenberg,C-P., Tada,M. (2008)
Sphingosine-1-phosphate receptors regulate individual cell behaviours underlying the directed migration of prechordal plate progenitor cells during zebrafish gastrulation.
Development 135:3043-3051

Tobin,J.L., Di Franco,M., Eichers,E., May-Simera,H., Garcia,M., Yan,J., Quinlan,R., Justice,M.J., Hennekam,R.C., Briscoe,J., Tada,M., Mayor,R., Burns,A.J., Lupski,J.R., Hammond,P., Beales,P.L. (2008)
Inhibition of neural crest migration underlies craniofacial dysmorphology and Hirschsprung's disease in Bardet-Biedl syndrome.
Proceedings of the National Academy of Sciences of the United States of America 105:6714-6719

Navratilova, P., Fredman, D., Hawkins, T.A., Turner, K., Lenhard, B., Becker, T. S., (2008)
Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes
Dev Biol. 327:526-540

Dekens, M. and Whitmore, D. (2008)
Autonomous onset of the circadian clock in the zebrafish embryo
EMBO Journal 27:2757–2765

Mione, M., Baldessari, D., Deflorian, G., Nappo, G., Santoriello, C., (2008)
How neuronal migration contributes to the morphogenesis of the CNS: insights from the zebrafish
Dev. Neur. 30:65-81

Cvejic, A., Hall, C., Bak-Maier, Flores, MV., Crosier, P., M, Redd. M. and Martin, P. (2008)
Live imaging and genetic dissection of WASp function during the in vivo wound inflammatory response of Zebrafish larvae
J. Cell Sci. 121:3196-3206

2007
 

Hadzhiev, Y., Lele, Z., Schindler, S., Wilson, S.W., Ahlberg, A., Straehle, U. and Mueller, F. (2007)
Hedgehog signaling patterns the outgrowth of unpaired skeletal appendages in zebrafish
BMC Developmental Biology 7:75-75

Carl, M., Bianco, H.B., Bajoghli, B., Aghaallaei, N., Czerny, T., and Wilson, S.W. (2007)
Wnt/Axin1/b-catenin Signaling Regulates Asymmetric Nodal Activation, Elaboration, and Concordance of CNS Asymmetries. 
Neuron 55:393-405

Kapsimali,M.,Kloosterman,W.P.,de Bruijn,E.,Rosa,F.,Plasterk,R.H.A.,Wilson,S.W. (2007)
MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system
Genome Biology 8:R173-R173

Blanco MJ, Barrallo-Gimeno A, Acloque H, Reyes AE, Tada M, Allende ML, Mayor R, Nieto MA. (2007)
Snail1a and Snail1b cooperate in the anterior migration of the axial mesendoderm in the zebrafish embryo
Development 134:4073-4081

Li, H., Lu, Y., Smith, H.K., Richardson, W.D. (2007)
Olig1 and Sox10 Interact Synergistically to Drive Myelin Basic Protein Transcription in Oligodendrocytes. 
Journal of Neuroscience 27:14375-14382

Strickler A., Yamamoto Y., and Jeffery W. R., (2007)
The lens controls cell survival in the retina: Evidence from the blind cavefish Astyanax. 
Dev. Biol. 311:512-523

Ashworth, R., B. Devogelaere, et al. (2007)
Molecular and functional characterization of inositol trisphosphate receptors during early zebrafish development.
J Biol Chem 282:13984-13993

Tawk, M., Araya, C., Lyons, D.A., Reugels, A.M., Girdler, G.C., Bayley, P.R., Hyde, D.R., Tada, M. and Clarke, J.D.W. (2007)
A mirror-symmetric cell division that orchestrates neuroepithelial morphogenesis. 
Nature 446:797-800

Caneparo, L., Huang, Y.L., Staudt, N., Tada, M., Ahrendt, R., Kazanskaya, O., Niehrs, C. and Houart, (2007)
C. Dickkopf-1 regulates gastrulation movements by coordinated modulation of Wnt/bcatenin and Wnt/PCP activities, through interaction with Dally-like homologue Knypek. 
Genes. Dev. 21:465-480

Muncan V, Faro A, Haramis AP, Hurlstone AF, Wienholds E, van Es J, Korving J, Begthel H, Zivkovic D, Clevers H (2007)
T-cell factor 4 (Tcf7l2) maintains proliferative compartments in zebrafish intestine.
EMBO Rep. 2007 Oct;8(10):966-73. Epub 2007 Sep 7.

Sarropoulou, E., Rafaella Franch, F., Bruno Louro, B, Power, D.M., Bargelloni, L., Magoulas, A., Senger, F., Tsalavouta, M., Patarnello, T., Galibert, F., Kotoulas, G. and Geisler, R. (2007)
A gene-based radiation hybrid map of the gilthead sea bream Sparus aurata refines and exploits conserved synteny with Tetraodon nigroviridis
BMC Genomics, 8:44 doi:10.1186/1471-2164-8-44.

Beales,P.L.,Bland,E.,Tobin,J.L., Bacchelli,C., Tuysuz,B.,Hill,J.,Rix,S.,Pearson,C.G., Kai,M.,Hartley,J.,Johnson,C., Irving,M.,Elcioglu,N., Winey,M.,Tada,M., Scambler,P.J. (2007)
IFT80, which encodes a conserved intraflagellar transport protein, is mutated in Jeune asphyxiating thoracic dystrophy
Nature Genetics 39:727-729

Tamai,T.K.,Young,L.C.,Whitmore,D. (2007)
Light signaling to the zebrafish circadian clock by Cryptochrome 1a.
Proceedings of the National Academy of Sciences of the United States of America 104:14712-14717

2006

Aligianis,I.A.,Morgan,N.V., Mione,M.,Johnson,C.A.,Rosser,E.,Hennekam,R.C.,Adams,G.,Trembath,R.C.,Pilz,D.T., Stoodley,N., Moore,A.T., Wilson,S.,Maher,E.R. (2006)
Mutation in Rab3 GTPase-activating protein (RAB3GAP) noncatalytic subunit in a kindred with Martsolf syndrome
American Journal of Human Genetics 78:702-707

Costagli,A.,Felice,B.,Guffanti,A.,Wilson,S.W.,Mione,M. (2006)
Identification of alternatively spliced dab1 isoforms in zebrafish
Development Genes and Evolution 216:291-299

Jeong JY, Einhorn Z, Mercurio S, Lee S, Lau B, Mione M, Wilson SW, Guo S. (2006)
Neurogenin1 is a determinant of zebrafish basal forebrain dopaminergic neurons and is regulated by the conserved zinc finger protein Tof/Fezl. 
Proceedings of the National Academy of Sciences of the United States of America 103:5143-5148

Carr,A.J.,Tamai,K.T.,Young,L.C.,Ferrer,V.,Dekens,M.P.,Whitmore,D. (2006)
Light reaches the very heart of the zebrafish clock
Chronobiology International 23:91-100

Mione,M.,Lele,Z.,Kwong,C.T.,Concha,M.L.,Clarke,J.D. (2006)
Expression of pcp4a in subpopulations of CNS neurons in zebrafish
Journal of Comparative Neurology 495:769-787

Foucher I, Mione M, Simeone A, Acampora D, Bally-Cuif L, Houart C. (2006)
Differentiation of cerebellar cell identities in absence of Fgf signalling in zebrafish Otx morphants. 
Development 133:1891-900

Kazakova, N., Li, H., Mora, A., Jessen, K., Mirsky, R., Richardson, W.D., Smith, H.K. (2006)
A screen for mutations in zebrafish that affect myelin gene expression in Schwann cells and oligodendrocytes. 
Developmental Biology 297:1-13

Redd, M.J., Holt, M.R., Dunn, G.A., Way, M. and Martin, P. (2006)
Imaging macrophage chemotaxis in vivo: studies of microtubule function in Zebrafish wound inflammation. 
Cell Motil Cytoskel 63:415-422

Cooper, J., Russell, C., Mitchinson, H. (2006)
Progress towards understanding disease mechanisms in small vertebrate models of Neuronal Ceroid Lipofuscinosis
Biochim Biophys Acta 1762:873-889

Witzel, S., Zimyanin, V., Carreira-Barbosa, F., Tada, M. and Heisenberg, C.-P. (2006)
Wnt11 controls cell-cell contact persistence by local accumulation of Frizzled-7 at the plasma membrane. 
Journal of Cell Biology 175:791-802

Franch, R, Louro, B*, Tsalavouta, M*, Chatziplis, D., Tsigenopoulos, C.S, Sarropoulou, E, Antonello, J., Magoulas, A., Patarnello, T., Power, D.M, Kotoulas, G., Bargelloni, L. (2006)
A genetic linkage map of the hermaphrodite teleost fish Sparus aurata L. 
Genetics 174: 851-861. 

Pogoda, H. M., Sternheim, N., Lyons, D.A., Diamond, B., Hawkins, T.A., Woods, I.G., Bhatt, D.H., Franzini-Armstrong, C., Dominguez, C., Arana, N., Jacobs J., Nix R., Fetcho J.R., Talbot W.S. (2006)
A genetic screen identifies genes essential for development of myelinated axons in zebrafish
Dev Biol. 298:118-131

2005

Aizawa,H., Bianco,I.H., Hamaoka,T., Miyashita,T., Uemura,O., Concha,M.L., Russell,C., Wilson,S.W., Okamoto,H. (2005)
Laterotopic representation of left-right information onto the dorso-ventral axis of a zebrafish midbrain target nucleus.
Current Biology 15:238-243

Barth,A., Miklosi,A., Watkins,J., Bianco,I.H., Wilson,S.W., Andrew,R.J. (2005)
fsi Zebrafish Show Concordant Reversal of Laterality of Viscera, Neuroanatomy, and a Subset of Behavioral Responses.
Current Biology 15:844-850

Norton,W.H., Mangoli,M., Lele,Z., Pogoda,H.M., Diamond,B., Mercurio,S., Russell,C., Teraoka,H., Stickney,H.L., Rauch,G.J., Heisenberg,C.P., Houart,C., Schilling,T.F., Frohnhoefer,H.G., Rastegar,S., Neumann,C.J., Gardiner,R.M., Stre,U., Geisler,R., Rees,M., Talbot,W.S., Wilson,S.W. (2005)
Monorail/Foxa2 regulates floorplate differentiation and specification of oligodendrocytes, serotonergic raphe neurones and cranial motoneurones.
Development 132:645-658

Gestri,G., Carl,M., Appolloni,I., Wilson,S.W., Barsacchi,G., Andreazzoli,M. (2005)
Six3 functions in anterior neural plate specification by promoting cell proliferation and inhibiting Bmp4 expression.
Development 132:2401-2413

Cavodeassi, F., Carreira-Barbosa, F., Young, R.M., Concha, M.L., Allende, M.L., Houart, C., Tada, M., Wilson, S.W. (2005)
Early Stages of Zebrafish Eye Formation Require the Coordinated Activity of Wnt11, Fz5, and the Wnt/ -Catenin Pathway.
Neuron 47:43-56

Carr,A.J.,Whitmore,D. (2005)
Imaging of single light responsive clock cells reveals fluctuating free-running periods
Nature Cell Biology 7:319-321

Carr,A.J.,Whitmore,D. (2005)
Peripheral time: clocks in organs and cells
The Biochemist 27:22-26

Tamai,T.K.,Carr,A.J.,Whitmore,D. (2005)
Zebrafish circadian clocks: cells that see light
Biochemical Society Transactions 33:962-966

Brennan, C., Mangoli, M., Dyer, C.E.F. and R. Ashworth (2005)
Acetylcholine and calcium signalling regulates muscle fibre formation in the zebrafish embryo. 
J. Cell Sci. 118:5181-5190

Espinasa L., Yamamoto Y., Jeffery W. R. (2005)
Non-optical releasers for aggressive behavior in blind and blinded Astyanax (Teleostei, Characidae). 
Behav Processes. 70:144-148

Vihtelic T. S., Yamamoto Y., Springer S., Jeffery W.R., Hyde D.R., (2005)
Lens opacity and photoreceptor degeneration in the zebrafish lens opaque mutant. 
Dev. Dyn. 233:52-65

Evans T., Yamamoto Y., Jeffery W. R., and Krone P. H. (2005)
The stress-inducible Hsp70 is also required for normal embryonic lens formation in the zebrafish. 
Cell Stress and Chaperones. 10:66-78

Ashworth, R. and C. Brennan (2005)
Use of transgenic zebrafish reporter lines to study calcium signalling in development.
Brief Funct Genomic Proteomic 4:186-93

Ross,A.J., May-Simera,H., Eichers,E.R., Kai,M., Hill,J., Jagger,D.J., Leitch,C.C., Chapple,J.P., Munro,P.M., Fisher,S., Tan,P.L., Phillips,H.M., Leroux,M.R., Henderson,D.J., Murdoch,J.N., Copp,A.J., Eliot,M.M., Lupski,J.R., Kemp,D.T., Dollfus,H., Tada,M., Katsanis,N., Forge,A., Beales,P.L. (2005)
Disruption of Bardet-Biedl syndrome ciliary proteins perturbs planar cell polarity in vertebrates.
Nature Genetics 37:1135-1140

Tada,M. (2005)
Notochord morphogenesis: a prickly subject for ascidians.
Current Biology 15:R14-R16

Brown, R.C., Tsalavouta, M., Terzoglou, V., Magoulas, A. & McAndrew, B.J. (2005)
Additional microsatellites for Sparus aurata and cross-species amplification within the Sparidae family
Mol. Ecol. Notes 5: 605-607

Makridis, P., Martins, S., Tsalavouta, M., Catalao-Dionisio, L., Kotoulas, G., Magoulas, A. & Dinis, M.T. (2005)
Antimicrobial activity in bacteria isolated from Senegalese sole, Solea senegalensis, fed with natural prey.
Aquac. Res. 36:1619-1627

2004

Teraoka,H., Russell,C., Regan,J., Chandrasekhar,A., Concha,M.L., Yokoyama,R., Higashi,K., Take-Uchi,M., Dong,W., Hiraga,T., Holder,N., Wilson,S.W. (2004)
Hedgehog and Fgf signaling pathways regulate the development of tphR-expressing serotonergic raphe neurons in zebrafish embryos. 
Journal of Neurobiology 60:275-88

Paukert,M., Sidi,S., Russell,C., Siba,M., Wilson,S. W., Nicolson,T., Grunder,S. (2004)
A family of acid-sensing ion channels from the zebrafish.
Journal of Biological Chemistry 279:18783-18791

Kapsimali,M.,Caneparo,L.,Houart,C.,Wilson,S.W. (2004)
Inhibition of Wnt/Axin/β-catenin pathway activity promotes ventral CNS midline tissue to adopt hypothalamic rather than floorplate identity
Development 131:5293-5933

Wilson,S.W.,Houart,C. (2004)
Early steps in the development of the forebrain
Developmental Cell 6:167-181

Kudoh T, Concha ML, Houart C, Dawid IB, Wilson SW. (2004)
Combinatorial Fgf and Bmp signalling patterns the gastrula ectoderm into prospective neural and epidermal domains
Development 131:3581-3592

Foster,R.G.,Peirson,S.,Whitmore,D. (2004)
Rhythmic and temporal processes in biology
Encyclopedia of Molecular Cell Biology and Molecular Medicine:413-482

Tamai,T.K.,Vardhanabhuti,V.,Foulkes,N.S.,Whitmore,D. (2004)
Early embryonic light detection improves survival
Current Biology 14:R104-R105

Ashworth, R. (2004)
Approaches to measuring calcium in zebrafish: focus on neuronal development. 
Cell Calcium 35:393-402

Soares D., Yamamoto Y., Strickler A., and Jeffery W. R., (2004)
The Lens Has a Specific Influence on Optic Nerve and Tectum Development in the Blind Cavefish Astyanax
Dev. Neurosci. 26:308-317

Vallone,D.,Gondi,S.B.,Whitmore,D.,Foulkes,N.S. (2004)
E-box function in a period gene repressed by light
Proceedings of the National Academy of Sciences of the United States of America 101:4106-4111

Yamamoto Y., (2004)
Cavefish
Curr. Biol. 14:R943-R943

Hooven T., Yamamoto Y., and Jeffery W. R., (2004)
Blind cavefish and heat shock protein chaperones: a novel role for hsp90a in lens apoptosis. 
Int. J. Dev. Biol. 48:731-738

Yamamoto Y., Stock D.W., and Jeffery W.R., (2004)
Hedgehog Signaling Controls Eye Degeneration in Blind Cavefish. 
Nature 431:844-847

2003

Concha,M. L., Russell,C., Regan,J. C., Tawk,M., Sidi,S., Gilmour,D. T., Kapsimali,M., Sumoy,L., Goldstone,K., Amaya,E., Kimelman,D., Nicolson,T., Grunder,S., Gomperts,M., Clarke,J. D., Wilson,S. W. (2003)
Local tissue interactions across the dorsal midline of the forebrain establish CNS laterality
Neuron 39:423-438

Barrios,A.,Poole,R.J.,Durbin,L.,Brennan,C.,Holder,N.,Wilson,S.W. (2003)
Eph/Ephrin signaling regulates the mesenchymal-to-epithelial transition of the paraxial mesoderm during somite morphogenesis
Current Biology 13:1571-1582

Bink,R.J.,Habuchi,H.,Lele,Z.,Dolk,E.,Joore,J.,Rauch,G.J.,Geisler,R.,Wilson,S.W.,Den Hertog,J.,Kimata,K.,Zivkovic,D. (2003)
Heparan Sulfate 6-O-Sulfotransferase is essential for muscle development in zebrafish
Journal of Biological Chemistry 278:31118-31127

Cau,E.,Wilson,S.W. (2003)
Ash1a and Neurogenin1 function downstream of Floating head to regulate epiphysial neurogenesis
Development 130:2455-2466

Masai,I.,Lele,Z., Yamaguchi,M.,Komori,A.,Nakata,A.,Nishiwaki,Y.,Wada,H.,Tanaka,H., Nojima,Y.,Hammerschmidt,M., Wilson,S.W.,Okamoto,H. (2003)
N-cadherin mediates retinal lamination, maintenance of forebrain compartments and patterning of retinal neurites
Development 130:2479-2494

Take-Uchi,M.,Clarke,J.D.W.,Wilson,S.W. (2003)
Hedgehog signaling maintains the optic stalk/retinal interface through the regulation of Vax gene activity
Development 130:955-968

Carreira-Barbosa,F., Concha,M.L., Takeuchi,M., Ueno,N., Wilson,S.W., Tada,M. (2003)
Prickle1 regulates cell movements during gastrulation and neuronal migration in zebrafish.
Development 130:4037-4046

Ulrich,F., Concha,M.L., Heid,P.J., Voss,E., Witzel,S., Roehl,H., Tada,M., Wilson,S.W., Adams,R.J., Soll,D.R., Heisenberg,C.P. (2003)
Slb/Wnt11 controls hypoblast cell migration and morphogenesis at the onset of zebrafish gastrulation.
Development 130:5375-5384

Russell,C. (2003)
The roles of hedgehogs and Fibroblast Growth Factors in eye development and retinal cell rescue.
Vision Research 43:899-912

Dekens,M.P.,Santoriello,C.,Vallone,D.,Grassi,G.,Whitmore,D.,Foulkes,N.S. (2003)
Light regulates the cell cycle in zebrafish
Current Biology 13:2051-2057

Lyons,D.A.,Guy,A.T.,Clarke,J.D.W. (2003)
Monitoring neural progenitor fate through multiple rounds of division in an intact vertebrate brain
Development 130:3427-3436

Moutsaki,P.,Whitmore,D.,Bellingham,J.,Sakamoto,K.,David-Gray,Z.K.,Foster,R.G. (2003)
Teleost multiple tissue (tmt) opsin: a candidate photopigment regulating the peripheral clocks of zebrafish?
Molecular Brain Research 112:135-145

Tamai,T.K.,Vardhanabhuti,V.,Arthur,S.,Foulkes,N.S.,Whitmore,D. (2003)
Flies and fish: birds of a feather
Journal of Neuroendocrinology 15:344-349

Kilian,B., Mansukoski,H., Carreira-Barbosa,F., Ulrich,F., Tada,M., Heisenberg,C-P. (2003)
The role of Ppt/Wnt5 in regulating cell shape and movement during zebrafish gastrulation.
Mechanisms of Development 120:467-476

2002

Schilling, T. and Wilson, S.W. (editors) (2001)
Evolution, development and genome analysis. 
Special issue of Phil. Trans. R. Soc. Lond. 336:1517-1679

Rohr,K.B., Barth,K.A., Varga,Z.M., Wilson,S.W. (2001)
The nodal pathway acts upstream of hedgehog signaling to specify ventral telencephalic identity.
Neuron 29:341-351

Concha,M.L.,Wilson,S.W. (2001)
Asymmetry in the epithalamus of vertebrates
Journal of Anatomy 199:63-84

Cooke,J.,Moens,C.,Roth,L.,Durbin,L.,Shiomi,K.,Brennan,C.,Kimmel,C.,Wilson,S.W.,Holder,N. (2001)
Eph signalling functions downstream of Val to regulate cell sorting and boundary formation in the caudal hindbrain
Development 128:571-580

Heisenberg,C.P.,Houart,C., Take-uchi,M.,Rauch,G.J.,Masai,I., Caneparo,L.,Concha, M.L.,Dale,T.C., Wilson,S.W., Stemple,D.L. (2001)
A mutation in the Gsk3-binding domain of zebrafish Masterblind/Axin1 leads to a fate transformation of telencephalon and eyes to diencephalon
Genes and Development 15:1427-1434

Ashworth, R., F. Zimprich, et al. (2001)
Buffering intracellular calcium disrupts motoneuron development in intact zebrafish embryos. 
Brain Res Dev Brain Res 129:169-179

Mione,M., Shanmugalingam,S., Kimelman,D., Griffin,K. (2001)
Overlapping expression of zebrafish T-brain-1 and eomesodermin during forebrain development.
Mechanisms of Development 100:93-97

Tada,M., Concha,M.L. (2001)
Vertebrate gastrulation: Calcium waves orchestrate cell movements.
Current Biology 11:R470-R472

2001

Concha,M.L., Burdine,R.D., Russell,C., Schier,A.F., Wilson, S. W. (2000)
A Nodal signaling pathway regulates ythe laterality of neuroanatomical asymmetries in the zebrafish forebrain.
Neuron 28:399-409

Shanmugalingam,S., Houart,C., Picker,A., Reifers,F., Macdonald,R., Barth,A., Griffin,K., Brand,M., Wilson,S.W. (2000)
Ace/Fgf8 is required for forebrain commissure formation and patterning of the telencephalon. 
Development 127:2549-2561

Heisenberg,C.P., Tada,M., Rauch,G.J., Saude,L., Concha,M.L., Geisler,R.E., Stemple,D.L., Smith,J.C., Wilson,S.W. (2000)
Silberblick/Wnt11 activity in paraxial tissue mediates convergent extension movements during zebrafish gastrulation.
Nature 405:76-81

Durbin,L.,Sordino,P.,Barrios,A.,Gering,M.,Thisse,C.,Thisse,B.,Brennan,C.,Green,A.,Wilson,S.W.,Holder,N. (2000)
Anterior-posterior patterning is required within segments for somite boundary formation in developing zebrafish
Development 127:1703-1713

Masai,I.,Stemple,D.L.,Okamoto,H.,Wilson,S.W. (2000)
Midline signals regulate retinal neurogenesis in zebrafish
Neuron 27:251-263

Williams,J.A.,Barrios,A.,Gatchalian,C.,Rubin,L.,Wilson,S.W.,Holder,N. (2000)
Programmed cell death in zebrafish Rohon Beard neurons is influenced by TrkC1/NT3 signalling
Developmental Biology 226:220-230

Wilson,S.W.,Rubenstein,J.L. (2000)
Induction and dorsoventral patterning of the telencephalon
Neuron 28:641-651

Norton WH, Rohr KB, Burnstock G. (2000)
Embryonic expression of a P2X(3) receptor encoding gene in zebrafish. 
Mech Dev. 99:149-152

Williams JA, Holder N. (2000)
Cell turnover in neuromasts of zebrafish larvae. 
Hear Res. 143:171-181

Rohr K.B.; Concha M.L. (2000)
Expression of nk2.1a during early development of the thyroid gland in zebrafish, 
Mechanisms of Development 95:267-270

2000

Barth,K.A., Kishimoto,Y., Rohr,K.B., Seydler,C., Schulte-Merker,S., Wilson,S.W. (1999)
Bmp activity establishes a gradient of positional information throughout the entire neural plate.
Development 126:4977-4987

Guo,S.,Brush,J.,Teraoka,H.,Goddard,A.,Wilson,S.W.,Mullins,M.C.,Rosenthal,A. (1999)
Development of noradrenergic neurons in the zebrafish hindbrain requires BMP, FGF8, and the homeodomain protein Soulless/Phox2a
Neuron 24:555-566

Guo,S.,Wilson,S.W.,Cooke,S.,Chitnis,A.,Driever,W.,Rosenthal,A. (1999)
Mutations in the zebrafish unmask shared regulatory pathways controlling the development of catecholaminergic neurons
Developmental Biology 208:473-487

Heisenberg,C.-P.H.,Brennan,C.,Wilson,S.W. (1999)
Zebrafish aussicht embryos exhibit widespread overexpression of ace (fgf8) and coincident defects in CNS development
Development 126:2129-2140

Ho,C.-Y.,Houart,C.,Wilson,S.W.,Stainier,D.Y.R. (1999)
A role for the extraembryonic yolk syncitial layer in patterning the zebrafish embryo suggested by properties of the hex gene
Current Biology 9:1131-1135

Wilson,S. (1999)
Nigel Holder (July 2, 1953-December 11, 1998).
Developmental Biology 208:253-254

Oates AC, Lackmann M, Power MA, Brennan C, Down LM, Do C, Evans B, Holder N, Boyd AW. (1999)
An early developmental role for eph-ephrin interaction during vertebrate gastrulation. 
Mech Dev. 83:77-94

Rodaway A, Takeda H, Koshida S, Broadbent J, Price B, Smith JC, Patient R, Holder N. (1999)
Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-beta family signals and discrimination of mesoderm and endoderm by FGF. 
Development 126:3067-3078

Reiter JF, Alexander J, Rodaway A, Yelon D, Patient R, Holder N, Stainier DY. (1999)
Gata5 is required for the development of the heart and endoderm in zebrafish. 
Genes Dev. 13:2983-2995

Holder N, Xu Q. (1999)
Microinjection of DNA, RNA, and protein into the fertilized zebrafish egg for analysis of gene function. 
Methods Mol Biol. 97:487-490

Holder N, Xu Q. (1999)
The zebrafish. An overview of its early development. 
Methods Mol Biol. 97:431-439

Holder N, Klein R. (1999)
Eph receptors and ephrins: effectors of morphogenesis. 
Development 126:2033-2044

Picker,A.,Brennan,C.,Reifers,F.,Clarke,J.D.W.,Holder,N.,Brand,M. (1999)
Requirement for the zebrafish mid-hindbrain boundary in midbrain polarisation, mapping and confinement of the retinotectal projection
Development 126:2967-2978

1999

Barth,K.A., Kishimoto,Y., Rohr,K.B., Seydler,C., Schulte-Merker,S., Wilson,S.W. (1999)
Bmp activity establishes a gradient of positional information throughout the entire neural plate.
Development 126:4977-4987

Guo,S.,Brush,J.,Teraoka,H.,Goddard,A.,Wilson,S.W.,Mullins,M.C.,Rosenthal,A. (1999)
Development of noradrenergic neurons in the zebrafish hindbrain requires BMP, FGF8, and the homeodomain protein Soulless/Phox2a
Neuron 24:555-566

Guo,S.,Wilson,S.W.,Cooke,S.,Chitnis,A.,Driever,W.,Rosenthal,A. (1999)
Mutations in the zebrafish unmask shared regulatory pathways controlling the development of catecholaminergic neurons
Developmental Biology 208:473-487

Heisenberg,C.-P.H.,Brennan,C.,Wilson,S.W. (1999)
Zebrafish aussicht embryos exhibit widespread overexpression of ace (fgf8) and coincident defects in CNS development
Development 126:2129-2140

Ho,C.-Y.,Houart,C.,Wilson,S.W.,Stainier,D.Y.R. (1999)
A role for the extraembryonic yolk syncitial layer in patterning the zebrafish embryo suggested by properties of the hex gene
Current Biology 9:1131-1135

Wilson,S. (1999)
Nigel Holder (July 2, 1953-December 11, 1998).
Developmental Biology 208:253-254

Oates AC, Lackmann M, Power MA, Brennan C, Down LM, Do C, Evans B, Holder N, Boyd AW. (1999)
An early developmental role for eph-ephrin interaction during vertebrate gastrulation. 
Mech Dev. 83:77-94

Rodaway A, Takeda H, Koshida S, Broadbent J, Price B, Smith JC, Patient R, Holder N. (1999)
Induction of the mesendoderm in the zebrafish germ ring by yolk cell-derived TGF-beta family signals and discrimination of mesoderm and endoderm by FGF. 
Development 126:3067-3078

Reiter JF, Alexander J, Rodaway A, Yelon D, Patient R, Holder N, Stainier DY. (1999)
Gata5 is required for the development of the heart and endoderm in zebrafish. 
Genes Dev. 13:2983-2995

Holder N, Xu Q. (1999)
Microinjection of DNA, RNA, and protein into the fertilized zebrafish egg for analysis of gene function. 
Methods Mol Biol. 97:487-490

Holder N, Xu Q. (1999)
The zebrafish. An overview of its early development. 
Methods Mol Biol. 97:431-439

Holder N, Klein R. (1999)
Eph receptors and ephrins: effectors of morphogenesis. 
Development 126:2033-2044

Picker,A.,Brennan,C.,Reifers,F.,Clarke,J.D.W.,Holder,N.,Brand,M. (1999)
Requirement for the zebrafish mid-hindbrain boundary in midbrain polarisation, mapping and confinement of the retinotectal projection
Development 126:2967-2978

1998

Houart,C.,Westerfield,M.,Wilson,S.W. (1998)
A small population of anterior cells patterns the forebrain during gastrulation
Nature 391:788-792

Shanmugalingam,S.,Wilson,S.W. (1998)
Isolation, expression and regulation of a zebrafish paraxis homologue.
Mechanisms of Development 78:85-89

Holder N, Cooke J, Brennan C. (1998)
The Eph receptor tyrosine kinases and the ephrins--roles in nervous system development. 
Eur J Neurosci. 10:405-408

Read EM, Rodaway AR, Neave B, Brandon N, Holder N, Patient RK, Walmsley ME. (1998)
Evidence for non-axial A/P patterning in the nonneural ectoderm of Xenopus and zebrafish pregastrula embryos. 
Int J Dev Biol. 42:763-774

Zimprich F, Ashworth R, Bolsover S. (1998)
Real-time measurements of calcium dynamics in neurons developing in situ within zebrafish embryos.
Pflugers Arch. 436:489-493

Durbin,L.,Brennan,C.,Shiomi,K.,Cooke,J.,Barrios,A.,Shanmugalingam,S.,Guthrie,B.,Lindberg,R.,Holder,N. (1998)
Eph signalling is required for segmentation and differentiation of the somites
Genes and Development 12:3096-3109

1997

Masai,I., Heisenberg,C.P., Barth,K.A., Macdonald,R., Adamek,S., Wilson,S.W. (1997)
floating head and masterblind regulate neuronal patterning in the roof of the forebrain.
Neuron 18:43-57

Kazanskaya,O.V., Severtzova,E.A., Barth,K.A., Ermakova,G.V., Lukyanov,S.A., Benyumov,A.O., Pannese,M., Boncinelli,E., Wilson,S.W., Zaraisky,A.G. (1997)
Anf: a novel class of vertebrate homeobox genes expressed at the anterior end of the main embryonic axis.
Gene 200:25-34

Cooke,J.E.,Xu,Q.,Wilson,S.W.,Holder,N. (1997)
Characterisation of five novel Eph-related receptor tyrosine kinases suggests roles in patterning the neural plate
Development Genes and Evolution 206:515-531

Marcos-Gutierrez,C.,Wilson,S.W.,Holder,N.,Pachnis,V. (1997)
The zebrafish homologue of the ret receptor and its pattern of expression during embryogenesis
Oncogene 14:879-889

Wilson,S.W.,Brennan,C.,Macdonald,R.,Brand,M.,Holder,N. (1997)
Analysis of axon tract formation in the zebrafish brain: the role of territories of gene expression and their boundaries
Cell and Tissue Research 290:189-196